PenBase
Penaeidin database

Reassignment of penaeidin nomenclature

PEN subgroup	Shrimp species	Peptide name	Nucleotide variation	Accession number or Author's name	Previous name	Remarks
PEN2	Litopenaeus vannamei	Litvan PEN2-1	PEN2-1*01	Y14925	pen 2
		Litvan PEN2-2		P81056	pen 1	Only the peptide is characterized
		Litvan PEN2-3	PEN2-3*01	AF390146	pen 2b	Difference at position 26-27 between publication and GenBank
		Litvan PEN2-3	PEN2-3*01	BE188445	pen 2
	Litopenaeus setiferus	Litset PEN2-1	PEN2-1*01	AY039205	pen 2d
	Litopenaeus stylirostris	Litsty PEN2-1	PEN2-1*01	AY351655	pen2
	Farfantepenaeus paulensis	Farpau PEN2-1	PEN2-1*01	Margherita		Confirmed sequence but no submission in GenBank
	Farfantepenaeus paulensis	Farpau PEN2-2	PEN2-2*01	Margherita		Confirmed sequence but no submission in GenBank
	Litopenaeus schmitti	Litsch PEN2-1	PEN2-1*01	Margherita		Confirmed sequence but no submission in GenBank
	Litopenaeus schmitti	Litsch PEN2-2	PEN2-2*01	Margherita		Confirmed sequence but no submission in GenBank
PEN3	Litopenaeus vannamei	Litvan PEN3-1	PEN3-1*01	Y14926	pen 3a
				AF390139	pen 3a
				AF387661	pen 3a.1
				AF387662	pen 3a.2
				AF387663	pen 3a .3
				BE188361	pen 3a
				BE188441	pen 3a
				BE188394	pen 3a
				BE188385	pen 3a
				BE188645	pen 3a
				BE188614	pen 3a
				BE188421	pen 3b
				BE188591	pen 3b
			PEN3-1*EST1	BE188380	pen 3a
			PEN3-1*EST2	BE188365	pen 3a
			PEN3-1*EST3	BE188401	pen 3c
		Litvan PEN3-2	PEN3-2*01	Y14927	pen 3b
		Litvan PEN3-3	PEN3-3*01	Y14928	pen 3c
		Litvan PEN3-4	PEN3-4*01	AF390145	pen 3i	Perhaps sequencing error at position 32
		Litvan PEN3-4	PEN3-4*01	BE188520	pen 3a
		Litvan PEN3-5	PEN3-5*01	AF390141	pen 3e	Perhaps sequencing error in signal peptide
		Litvan PEN3-6	PEN3-6*01	AF387660	pen 3j
		Litvan PEN3-7	PEN3-7*01	AF390142	pen 3f	Perhaps sequencing error in signal peptide
		Litvan PEN3-7	PEN3-7*01	BE188397	pen 3a
		Litvan PEN3-8	PEN3-8*01	AF390140	pen 3d
				BE188329	pen 3a
				BE188327	pen 3a
				BE188449	pen 3a
			PEN3-8*EST1	B188363	pen 3a
		Litvan PEN3-9	PEN3-9*01	AF390143	pen 3g
		Litvan PEN3-10	PEN3-10*01	AF390144	pen 3h	Perhaps sequencing error at position 47
		Litvan PEN3-10	PEN3-10*01	BE188641	pen 3a
	Litopenaeus setiferus	Litset PEN3-1	PEN3-1*01	AY039206	pen 3l
				BE846863	pen 3c
				BE846808	pen 3c
				BE846681	pen 3c
				BE846679	pen 3c
				BE846528	pen 3c
				BE846522	pen 3c
				BE846439	pen 3c
				BE846898	pen 3c/3a
				BE846650	pen 3c/3a
				BE846633	pen 3c/3a
				BE846862	pen 3c/3b
				BE846576	pen 3c/3b
			PEN3-1*EST1	BE846568	pen 3c/3a
			PEN3-1*EST2	BE846756	pen 3c
			PEN3-1*ESTx	BE846771	pen 3c
				BE846441	pen 3c	x : uncertainty of sequencing on a nucleotide base
				BE846800	pen 3c/3a	x : uncertainty of sequencing on a nucleotide base
		Litset PEN3-2	PEN3-2*01	AY039204	pen 3n
		Litset PEN3-2	PEN3-2*01	BE846618	pen 3c
		Litset PEN3-3	PEN3-3*01	AY039202	pen 3k
				BE846796	pen 3c
				BE846716	pen 3c
				BE846625	pen 3c
				BE846624	pen 3c
				BE846611	pen 3c
				BE846605	pen 3c
				BE846545	pen 3c
				BE846515	pen 3c
				BE846510	pen 3c
				BE846467	pen 3c
				BE846879	pen 3c/3a
PEN3-3*EST1			BE846634	pen 3c/3b
PEN3-3*EST2			BE846900	pen 3c/3a
PEN3-3*EST3			BE846449	pen 3c
PEN3-3*EST4			BE846501	pen 3c
PEN3-3*ESTx			BE846495	pen 3c	x : uncertainty of sequencing on a nucleotide base
PEN3-3*ESTx			BE846777	pen 3c/3b	x : uncertainty of sequencing on a nucleotide base
Litset PEN3-4		PEN3-4*01	AY039203	pen 3m
Litset PEN3-4		PEN3-4*01	BE846617	pen 3c
Penaeus monodon	Penmon PEN3-1	PEN3-1*01	BI784459	pen 3a	Confirmed sequence but no submission in GenBank
	Penmon PEN3-2	PEN3-2*01	BI018089	pen 3c	Confirmed sequence but no submission in GenBank
	Penmon PEN3-3	PEN3-3*01	BI784441	pen 3b	Confirmed sequence but no submission in GenBank
Litopenaeus stylirostris	Litsty PEN3-1	PEN3-1*01	AY351656	pen 3
Litopenaeus stylirostris	Litsty PEN3-2	PEN3-2*01	Muñoz	pen 3-2	Confirmed sequence but no submission in GenBank
Fenneropenaeus chinensis	Fenshi PEN3-1	PEN3-1*01	AY260151	pen 3-1
Penaeus semisulcatus	Penssem PEN3-1	PEN3-1*01	Muñoz	pen 3	Confirmed sequence but no submission in GenBank
PEN4	Litopenaeus vannamei	Litvan PEN4-1	PEN4-1*01	AF390147	pen 4a
		Litvan PEN4-1	PEN4-1*01	BE188446	pen 3a
		Litvan PEN4-2	PEN4-2*01	AF390149	pen 4c
	Litopenaeus setiferus	Litset PEN4-1	PEN4-1*01	AY039207	pen 4d
	Litopenaeus setiferus	Litset PEN4-1	PEN4-1*ESTx	BE846444	pen 3a	x : uncertainty of sequencing on a nucleotide base
	Litopenaeus schmitti	Litsch PEN4-1	PEN4-1*01	Margherita		Confirmed sequence but no submission in GenBank

PenBase Penaeidin database

PenBase
Penaeidin database